fix closing of window

fix  close operation

haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/ModalDialogs.java

 package cz.it4i.fiji.haas.ui;
 
 import javax.swing.JDialog;
-import javax.swing.WindowConstants;
 
 public class ModalDialogs {
-	public static <T extends JDialog>T doModal(T dialog) {
+	public static <T extends JDialog>T doModal(T dialog, int operation) {
 		dialog.setModal(true);
-		dialog.setDefaultCloseOperation(WindowConstants.DO_NOTHING_ON_CLOSE);
+		dialog.setDefaultCloseOperation(operation);
 		new Thread(()->dialog.setVisible(true)).start();
 		return dialog;
 	}

haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/CheckStatusOfHaaS.java

@@ -7,6 +7,8 @@ import java.nio.file.Path;
 import java.nio.file.Paths;
 import java.util.Collection;
 
+import javax.swing.WindowConstants;
+
 import org.scijava.Context;
 import org.scijava.command.Command;
 import org.scijava.log.LogService;
@@ -54,8 +56,8 @@ public class CheckStatusOfHaaS implements Command {
 				downloadAll();
 			} else {
 				CheckStatusOfHaaSWindow window;
-				window = ModalDialogs.doModal(new CheckStatusOfHaaSWindow(getFrame(), context));
-				ProgressDialog dialog = ModalDialogs.doModal(new ProgressDialog(window));
+				window = ModalDialogs.doModal(new CheckStatusOfHaaSWindow(getFrame(), context),WindowConstants.DISPOSE_ON_CLOSE);
+				ProgressDialog dialog = ModalDialogs.doModal(new ProgressDialog(window),WindowConstants.DO_NOTHING_ON_CLOSE);
 				dialog.setTitle("Downloading info about jobs");
 				Collection<JobInfo> jobs = jobManager.getJobs(dialog);
 				int count = 0;

haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/RunWithHaaS.java

@@ -9,6 +9,8 @@ import java.nio.file.Paths;
 import java.util.Collection;
 import java.util.stream.Collectors;
 
+import javax.swing.WindowConstants;
+
 import org.scijava.Context;
 import org.scijava.command.Command;
 import org.scijava.log.LogService;
@@ -56,7 +58,7 @@ public class RunWithHaaS implements Command {
 			jobManager = new JobManager(getWorkingDirectoryPath(), TestingConstants.getSettings());
 			jobManager.startJob(
 					getContent(dataDirectory).stream().map(HaaSClient::getUploadingFile).collect(Collectors.toList()),
-					ModalDialogs.doModal(new ProgressDialog(getFrame())));
+					ModalDialogs.doModal(new ProgressDialog(getFrame()), WindowConstants.DO_NOTHING_ON_CLOSE));
 		} catch (IOException e) {
 			log.error(e);
 		}

haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSController.java

@@ -3,6 +3,8 @@ package cz.it4i.fiji.haas_snakemake_spim.ui;
 import java.awt.Window;
 import java.util.function.Function;
 
+import javax.swing.WindowConstants;
+
 import org.scijava.log.LogService;
 import org.scijava.plugin.Parameter;
 
@@ -20,7 +22,6 @@ import javafx.scene.control.TableColumn;
 import javafx.scene.control.TableView;
 import javafx.scene.input.ContextMenuEvent;
 
-
 public class CheckStatusOfHaaSController {
 
 	@Parameter
@@ -46,9 +47,10 @@ public class CheckStatusOfHaaSController {
 	}
 
 	private void downloadData(ActionEvent event) {
-		Platform.runLater(() -> jobs.getSelectionModel().getSelectedItem().downloadData(ModalDialogs.doModal(new ProgressDialog(root))));
+		Platform.runLater(() -> jobs.getSelectionModel().getSelectedItem()
+				.downloadData(ModalDialogs.doModal(new ProgressDialog(root), WindowConstants.DO_NOTHING_ON_CLOSE)));
 	}
-	
+
 	private void initMenu() {
 		ContextMenu cm = new ContextMenu();
 		MenuItem download = new MenuItem("Download");
@@ -63,7 +65,7 @@ public class CheckStatusOfHaaSController {
 					return;
 				}
 				JobInfo job = jobs.getSelectionModel().getSelectedItem();
-				
+
 				if (job != null && job.needsDownload()) {
 					download.setDisable(false);
 				} else {

haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSWindow.java

@@ -15,17 +15,17 @@ public class CheckStatusOfHaaSWindow extends FXFrame<CheckStatusOfHaaSController
 
 	@Parameter
 	private Context context;
-	
+
 	private CheckStatusOfHaaSController controller;
 
 	public CheckStatusOfHaaSWindow(Frame applicationFrame, Context context) {
-		super(applicationFrame,"/cz/it4i/fiji/haas/ui/CheckStatusOfHaaS.fxml");
+		super(applicationFrame, "/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaS.fxml");
 		this.context = context;
 		init(this::initController);
 		this.setResizable(false);
 		this.setTitle("Manage status of HaaS jobs");
 	}
-	
+
 	public void addJob(JobInfo job) {
 		Platform.runLater(new Runnable() {
 			@Override
@@ -34,7 +34,7 @@ public class CheckStatusOfHaaSWindow extends FXFrame<CheckStatusOfHaaSController
 			}
 		});
 	}
-	
+
 	private void initController(CheckStatusOfHaaSController controller) {
 		this.controller = controller;
 		context.inject(controller);