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Commit 24721c58 authored by Peter Steinbach's avatar Peter Steinbach
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removed superfluous line in define_xml_tif; fixed directory name

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spim_registration/timelapse/tomancak_test_cluster.json
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...@@ -5,7 +5,7 @@ ...@@ -5,7 +5,7 @@
"fiji-prefix" : "/sw/bin/xvfb-run -a", "fiji-prefix" : "/sw/bin/xvfb-run -a",
"directory_cuda" : "/lustre/projects/hpcsupport/steinbac/unicore/christopher/unicore_jobs/Fiji.app.cuda_new/lib/", "directory_cuda" : "/lustre/projects/hpcsupport/steinbac/unicore/christopher/unicore_jobs/Fiji.app.cuda_new/lib/",
"merged_xml" : "hdf5_test_unicore_merge", "merged_xml" : "hdf5_test_unicore_merge",
"bsh_directory" : "/home/steinbac/development/cschmied-snakemake-workflows/spim_registration/timelapse/", "bsh_directory" : "/home/steinbac/development/schmied-snakemake-workflows/spim_registration/timelapse/",
"first_xml_filename" : "test_unicore", "first_xml_filename" : "test_unicore",
"hdf5_xml_filename" : "\"hdf5_test_unicore\"", "hdf5_xml_filename" : "\"hdf5_test_unicore\"",
"fusion_switch" : "deconvolution", "fusion_switch" : "deconvolution",
...@@ -33,7 +33,6 @@ ...@@ -33,7 +33,6 @@
"define_xml_tif" : "define_xml_tif" :
{ {
"timepoints" : "0-4",
"acquisition_angles" : "0,72,144,216,288", "acquisition_angles" : "0,72,144,216,288",
"channels" : "0", "channels" : "0",
"image_file_pattern" : "img_TL{{t}}_Angle{{a}}.tif", "image_file_pattern" : "img_TL{{t}}_Angle{{a}}.tif",
......
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