Merge branch 'adding_resave' of https://github.com/psteinb/snakemake-workflows into psteinb-adding_resave

Conflicts:
	spim_registration/timelapse/tomancak_czi.json

various changes: removed dummy files between registration->xml_merge; spotted problem in timepoint number for registration; refactored padding

Merge branch 'adding_resave' of https://github.com/psteinb/snakemake-workflows into psteinb-adding_resave

Conflicts:
	spim_registration/timelapse/Snakefile

Takes now the fusion - deconvolution switch into account.

Merge branch 'adding_resave' of https://github.com/psteinb/snakemake-workflows into psteinb-adding_resave

Conflicts:
	spim_registration/timelapse/Snakefile

calculation of job number is performed in export.bsh script

Padding and calcluation of job_number for resave_hdf5

adapted snakemake file to new requirements (comply with tif/czi fille…

adapted snakemake file to new requirements (comply with tif/czi filled directories, config file needs to state number of timepoints)

Build in a switch to decide witch fusion method should be used.
Tested workflow and works.