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Commit 16f585fa authored by Lukáš Krupčík's avatar Lukáš Krupčík
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fix

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6 merge requests!368Update prace.md to document the change from qprace to qprod as the default...,!367Update prace.md to document the change from qprace to qprod as the default...,!366Update prace.md to document the change from qprace to qprod as the default...,!323extended-acls-storage-section,!196Master,!187Singularity
...@@ -6,26 +6,22 @@ On clusters we have different versions of operating systems images. Below you se ...@@ -6,26 +6,22 @@ On clusters we have different versions of operating systems images. Below you se
Salomon Anselm Salomon Anselm
├── CentOS ├── CentOS ├── CentOS ├── CentOS
│ ├── 6.9 │ ├── 6.9 │ ├── 6.9 │ ├── 6.9
│ ├── 6.9-shell │ ├── 6.9-shell
│ ├── 6.9-MIC │ ├── 6.9-GPU │ ├── 6.9-MIC │ ├── 6.9-GPU
│ ├── 6.9-MIC-shell │ ├── 6.9-GPU-shell │ └── 7.3 │ └── 7.3
│ ├── 7.3 │ ├── 7.3
│ └── 7.3-shell │ └── 7.3-shell
├── Debian ├── Debian ├── Debian ├── Debian
│ ├── 8.0 │ ├── 8.0 │ └── 8.0 │ └── 8.0
│ └── 8.0-shell │ └── 8.0-shell
├── Fedora ├── Fedora ├── Fedora ├── Fedora
│ ├── 26 │ ├── 26 │ └── 26 │ └── 26
│ └── 26-shell │ └── 26-shell
└── Ubuntu └── Ubuntu └── Ubuntu └── Ubuntu
├── 16.04 ├── 16.04 └── 16.04 └── 16.04
└── 16.04-shell └── 16.04-shell
``` ```
For current information on available images, refer to the `ml av` statement and the `OS` For current information on available images, refer to the `ml av` and see statement the `OS`
## Available Operating Systems Images ## Available Operating Systems Images
On IT4Innovations clusters we support different operating system.
**Supported OS:** **Supported OS:**
* CentOS * CentOS
...@@ -38,17 +34,11 @@ For current information on available images, refer to the `ml av` statement and ...@@ -38,17 +34,11 @@ For current information on available images, refer to the `ml av` statement and
* GPU - graphics cards * GPU - graphics cards
* MIC - Intel Xeon Phi cards * MIC - Intel Xeon Phi cards
**Type images**
* classic
* shell - automatics start shell after load module
## IT4Innovations Wrappers ## IT4Innovations Wrappers
For using modules we prepared special wrappers For using modules we prepared special wrappers
* image-exec * image-exec
* image-load
* image-mpi * image-mpi
* image-run * image-run
* image-shell * image-shell
...@@ -65,17 +55,13 @@ image-exec cat /etc/centos-release ...@@ -65,17 +55,13 @@ image-exec cat /etc/centos-release
CentOS Linux release 7.3.1708 (Core) CentOS Linux release 7.3.1708 (Core)
``` ```
**image-load**
Settings and loading image. Script for `shell` modules.
**image-mpi** **image-mpi**
MPI wrapper. More in the chapter [Examples MPI](#MPI) MPI wrapper. More in the chapter [Examples MPI](#MPI)
**image-run** **image-run**
Run subscript into image Run subscript into image.
**image-shell** **image-shell**
...@@ -125,22 +111,10 @@ Your image of CentOS/6.9 is at location: /home/login/.singularity/images/CentOS- ...@@ -125,22 +111,10 @@ Your image of CentOS/6.9 is at location: /home/login/.singularity/images/CentOS-
!!! note !!! note
First usage image copy image from /apps/all/OS/... to your /home (.singularity/images) First usage image copy image from /apps/all/OS/... to your /home (.singularity/images)
For classic image, but autostart shell
```console
$ ml CentOS/6.9-shell
Singularity: Invoking an interactive shell within container...
Singularity CentOS-6.9_20180220133305.img:> exit
exit
Welcome to the normal operating system ()
```
For special image (GPU, MIC) For special image (GPU, MIC)
```console ```console
$ ml CentOS/6.9-GPU $ ml CentOS/6.9-GPU
``` ```
!!! note !!! note
...@@ -153,7 +127,8 @@ Submited job `qsub -A PROJECT -q qprod -l select=2:mpiprocs=24 -l walltime=00:30 ...@@ -153,7 +127,8 @@ Submited job `qsub -A PROJECT -q qprod -l select=2:mpiprocs=24 -l walltime=00:30
### MPI Into Image ### MPI Into Image
```console ```console
$ ml CentOS/6.9-shell $ ml CentOS/6.9
$ image-shell
Singularity: Invoking an interactive shell within container... Singularity: Invoking an interactive shell within container...
Singularity CentOS-6.9_20180220092823.img:~> mpirun hostname | wc -l Singularity CentOS-6.9_20180220092823.img:~> mpirun hostname | wc -l
...@@ -183,5 +158,6 @@ $ image-mpi hostname | wc -l ...@@ -183,5 +158,6 @@ $ image-mpi hostname | wc -l
1. Transfer image to your local computer 1. Transfer image to your local computer
1. Edit image 1. Edit image
1. Transfer image from your local computer to cluster /home
1. Load module Singularity (`ml Singularity`) 1. Load module Singularity (`ml Singularity`)
1. Use your image 1. Use your image
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