Commit 407d8b27 authored by Lukáš Krupčík's avatar Lukáš Krupčík
Browse files

module load -> ml

parent 9bbfd123
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......@@ -7,7 +7,7 @@ Anselm provides commercial as well as academic variants. Academic variants are d
To load the latest version of any ANSYS product (Mechanical, Fluent, CFX, MAPDL,...) load the module:
```console
$ module load ansys
$ ml ansys
```
ANSYS supports interactive regime, but due to assumed solution of extremely difficult tasks it is not recommended.
......
......@@ -25,14 +25,14 @@ In case of debugging on accelerators:
Load all necessary modules to compile the code. For example:
```console
$ module load intel
$ module load impi ... or ... module load openmpi/X.X.X-icc
$ ml intel
$ ml impi ... or ... module load openmpi/X.X.X-icc
```
Load the Allinea DDT module:
```console
$ module load Forge
$ ml Forge
```
Compile the code:
......
......@@ -13,7 +13,7 @@ Our license is limited to 64 MPI processes.
Allinea Performance Reports version 6.0 is available
```console
$ module load PerformanceReports/6.0
$ ml PerformanceReports/6.0
```
The module sets up environment variables, required for using the Allinea Performance Reports. This particular command loads the default module, which is performance reports version 4.2.
......@@ -46,7 +46,7 @@ $ qsub -q qexp -l select=2:ncpus=16:mpiprocs=16:ompthreads=1 -I
Then we load the modules and run the program the usual way:
```console
$ module load intel impi allinea-perf-report/4.2
$ ml intel impi allinea-perf-report/4.2
$ mpirun ./mympiprog.x
```
......
......@@ -9,7 +9,7 @@ We provide state of the art programms and tools to develop, profile and debug HP
The intel debugger version 13.0 is available, via module intel. The debugger works for applications compiled with C and C++ compiler and the ifort fortran 77/90/95 compiler. The debugger provides java GUI environment. Use X display for running the GUI.
```console
$ module load intel
$ ml intel
$ idb
```
......@@ -20,7 +20,7 @@ Read more at the [Intel Debugger](intel-suite/intel-debugger/) page.
Allinea DDT, is a commercial debugger primarily for debugging parallel MPI or OpenMP programs. It also has a support for GPU (CUDA) and Intel Xeon Phi accelerators. DDT provides all the standard debugging features (stack trace, breakpoints, watches, view variables, threads etc.) for every thread running as part of your program, or for every process even if these processes are distributed across a cluster using an MPI implementation.
```console
$ module load Forge
$ ml Forge
$ forge
```
......@@ -31,7 +31,7 @@ Read more at the [Allinea DDT](debuggers/allinea-ddt/) page.
Allinea Performance Reports characterize the performance of HPC application runs. After executing your application through the tool, a synthetic HTML report is generated automatically, containing information about several metrics along with clear behavior statements and hints to help you improve the efficiency of your runs. Our license is limited to 64 MPI processes.
```console
$ module load PerformanceReports/6.0
$ ml PerformanceReports/6.0
$ perf-report mpirun -n 64 ./my_application argument01 argument02
```
......@@ -42,7 +42,7 @@ Read more at the [Allinea Performance Reports](debuggers/allinea-performance-rep
TotalView is a source- and machine-level debugger for multi-process, multi-threaded programs. Its wide range of tools provides ways to analyze, organize, and test programs, making it easy to isolate and identify problems in individual threads and processes in programs of great complexity.
```console
$ module load totalview
$ ml totalview
$ totalview
```
......@@ -53,7 +53,7 @@ Read more at the [Totalview](debuggers/total-view/) page.
Vampir is a GUI trace analyzer for traces in OTF format.
```console
$ module load Vampir/8.5.0
$ ml Vampir/8.5.0
$ vampir
```
......
......@@ -9,7 +9,7 @@ Intel PCM (Performance Counter Monitor) is a tool to monitor performance hardwar
Currently installed version 2.6. To load the [module](../../environment-and-modules/), issue:
```console
$ module load intelpcm
$ ml intelpcm
```
## Command Line Tools
......
......@@ -13,7 +13,7 @@ PAPI can be used with parallel as well as serial programs.
To use PAPI, load [module](../../environment-and-modules/) papi:
```console
$ module load papi
$ ml papi
```
This will load the default version. Execute module avail papi for a list of installed versions.
......@@ -196,13 +196,13 @@ $ ./matrix
To use PAPI in [Intel Xeon Phi](../intel-xeon-phi/) native applications, you need to load module with " -mic" suffix, for example " papi/5.3.2-mic" :
```console
$ module load papi/5.3.2-mic
$ ml papi/5.3.2-mic
```
Then, compile your application in the following way:
```console
$ module load intel
$ ml intel
$ icc -mmic -Wl,-rpath,/apps/intel/composer_xe_2013.5.192/compiler/lib/mic matrix-mic.c -o matrix-mic -lpapi -lpfm
```
......@@ -226,7 +226,7 @@ $ /apps/tools/papi/5.4.0-mic/bin/papi_native_avail
To use PAPI in offload mode, you need to provide both host and MIC versions of PAPI:
```console
$ module load papi/5.4.0
$ ml papi/5.4.0
$ icc matrix-offload.c -o matrix-offload -offload-option,mic,compiler,"-L$PAPI_HOME-mic/lib -lpapi" -lpapi
```
......
......@@ -9,7 +9,7 @@ Vampir is a commercial trace analysis and visualization tool. It can work with t
Version 8.5.0 is currently installed as module Vampir/8.5.0 :
```console
$ module load Vampir/8.5.0
$ ml Vampir/8.5.0
$ vampir &
```
......
......@@ -96,8 +96,8 @@ In this example, we compile and link the cblas_dgemm example, using LP64 interfa
### Example: MKL and GNU Compiler
```console
$ module load gcc
$ module load imkl
$ ml gcc
$ ml imkl
$ cp -a $MKL_EXAMPLES/cblas /tmp/
$ cd /tmp/cblas
$ gcc -w source/cblas_dgemmx.c source/common_func.c -o cblas_dgemmx.x -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core -lgomp -lm
......
......@@ -90,8 +90,8 @@ The second part of the command shows how to request all necessary licenses. In t
Once the access to compute nodes is granted by PBS, user can load following modules and start Matlab:
```console
cn79$ module load matlab/R2013a-EDU
cn79$ module load impi/4.1.1.036
cn79$ ml matlab/R2013a-EDU
cn79$ ml impi/4.1.1.036
cn79$ matlab &
```
......
......@@ -37,7 +37,7 @@ If user needs to prepare COMSOL jobs in the interactive mode it is recommend to
```console
$ xhost +
$ qsub -I -X -A PROJECT_ID -q qprod -l select=1:ppn=24
$ module load COMSOL
$ ml COMSOL
$ comsol
```
......@@ -79,8 +79,8 @@ LiveLink for MATLAB is available in both **EDU** and **COM** **variant** of the
```console
$ xhost +
$ qsub -I -X -A PROJECT_ID -q qexp -l select=1:ppn=24
$ module load MATLAB
$ module load COMSOL
$ ml MATLAB
$ ml COMSOL
$ comsol server MATLAB
```
......
......@@ -33,7 +33,7 @@ Read more at the [Allinea DDT](allinea-ddt/) page.
Allinea Performance Reports characterize the performance of HPC application runs. After executing your application through the tool, a synthetic HTML report is generated automatically, containing information about several metrics along with clear behavior statements and hints to help you improve the efficiency of your runs. Our license is limited to 64 MPI processes.
```console
$ module load PerformanceReports/6.0
$ ml PerformanceReports/6.0
$ perf-report mpirun -n 64 ./my_application argument01 argument02
```
......@@ -55,7 +55,7 @@ Read more at the [Totalview](total-view/) page.
Vampir is a GUI trace analyzer for traces in OTF format.
```console
$ module load Vampir/8.5.0
$ ml Vampir/8.5.0
$ vampir
```
......
......@@ -32,7 +32,7 @@ $ ml impi **or** ml OpenMPI/X.X.X-icc
Load the Allinea DDT module:
```console
$ module load Forge
$ ml Forge
```
Compile the code:
......
......@@ -13,7 +13,7 @@ Our license is limited to 64 MPI processes.
Allinea Performance Reports version 6.0 is available
```console
$ module load PerformanceReports/6.0
$ ml PerformanceReports/6.0
```
The module sets up environment variables, required for using the Allinea Performance Reports.
......
......@@ -18,7 +18,7 @@ For details see the [Intel MKL Reference Manual](http://software.intel.com/sites
Intel MKL version 11.2.3.187 is available on the cluster
```console
$ module load imkl
$ ml imkl
```
The module sets up environment variables, required for linking and running mkl enabled applications. The most important variables are the $MKLROOT, $CPATH, $LD_LIBRARY_PATH and $MKL_EXAMPLES
......@@ -64,8 +64,8 @@ Number of examples, demonstrating use of the Intel MKL library and its linking i
### Working With Examples
```console
$ module load intel
$ module load imkl
$ ml intel
$ ml imkl
$ cp -a $MKL_EXAMPLES/cblas /tmp/
$ cd /tmp/cblas
$ make sointel64 function=cblas_dgemm
......@@ -76,8 +76,8 @@ In this example, we compile, link and run the cblas_dgemm example, demonstrating
### Example: MKL and Intel Compiler
```console
$ module load intel
$ module load imkl
$ ml intel
$ ml imkl
$ cp -a $MKL_EXAMPLES/cblas /tmp/
$ cd /tmp/cblas
$
......@@ -96,8 +96,8 @@ In this example, we compile and link the cblas_dgemm example, using LP64 interfa
### Example: Intel MKL and GNU Compiler
```console
$ module load GCC
$ module load imkl
$ ml GCC
$ ml imkl
$ cp -a $MKL_EXAMPLES/cblas /tmp/
$ cd /tmp/cblas
$ gcc -w source/cblas_dgemmx.c source/common_func.c -o cblas_dgemmx.x -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core -lgomp -lm
......
......@@ -24,7 +24,7 @@ The trace will be saved in file myapp.stf in the current directory.
To view and analyze the trace, open ITAC GUI in a [graphical environment](../../../general/accessing-the-clusters/graphical-user-interface/x-window-system/):
```console
$ module load itac/9.1.2.024
$ ml itac/9.1.2.024
$ traceanalyzer
```
......
......@@ -44,7 +44,7 @@ In this example, we activate the latest OpenMPI with latest GNU compilers (OpenM
To use OpenMPI with the intel compiler suite, use
```console
$ module load iompi/2015.03
$ ml iompi/2015.03
```
In this example, the openmpi 1.8.6 using intel compilers is activated. It's used "iompi" toolchain.
......
......@@ -11,7 +11,7 @@ This section contains a collection of high-level interpreted languages, primaril
MATLAB®^ is a high-level language and interactive environment for numerical computation, visualization, and programming.
```console
$ module load MATLAB
$ ml MATLAB
$ matlab
```
......@@ -22,7 +22,7 @@ Read more at the [Matlab page](matlab/).
GNU Octave is a high-level interpreted language, primarily intended for numerical computations. The Octave language is quite similar to Matlab so that most programs are easily portable.
```console
$ module load Octave
$ ml Octave
$ octave
```
......@@ -33,7 +33,7 @@ Read more at the [Octave page](octave/).
The R is an interpreted language and environment for statistical computing and graphics.
```console
$ module load R
$ ml R
$ R
```
......
......@@ -10,7 +10,7 @@ Matlab is available in versions R2015a and R2015b. There are always two variants
To load the latest version of Matlab load the module
```console
$ module load MATLAB
$ ml MATLAB
```
By default the EDU variant is marked as default. If you need other version or variant, load the particular version. To obtain the list of available versions use
......@@ -79,7 +79,7 @@ The second part of the command shows how to request all necessary licenses. In t
Once the access to compute nodes is granted by PBS, user can load following modules and start Matlab:
```console
r1i0n17$ module load MATLAB/2015a-EDU
r1i0n17$ ml MATLAB/2015a-EDU
r1i0n17$ matlab &
```
......
......@@ -34,7 +34,7 @@ The R on Anselm is linked to highly optimized MKL mathematical library. This pro
To run R interactively, using Rstudio GUI, log in with ssh -X parameter for X11 forwarding. Run rstudio:
```console
$ module load Rstudio
$ ml Rstudio
$ rstudio
```
......
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