update

docs.it4i/anselm-cluster-documentation/capacity-computing.md

@@ -290,7 +290,7 @@ When deciding this values, think about following guiding rules:
 1. Number of tasks should be modulo 16.
 1. These rules are valid only when all tasks have similar task walltimes T.
 
-### Submit the Job Array
+### Submit the Job Array (-J)
 
 To submit the job array, use the qsub -J command. The 992 tasks' job of the [example above](capacity-computing/#combined_example) may be submitted like this:
 

docs.it4i/anselm-cluster-documentation/environment-and-modules.md

 # Environment and Modules
 
-### Environment Customization
+## Environment Customization
 
 After logging in, you may want to configure the environment. Write your preferred path definitions, aliases, functions and module loads in the .bashrc file
 
@@ -26,7 +26,7 @@ fi
 !!! note
     Do not run commands outputting to standard output (echo, module list, etc) in .bashrc for non-interactive SSH sessions. It breaks fundamental functionality (scp, PBS) of your account! Conside utilization of SSH session interactivity for such commands as stated in the previous example.
 
-### Application Modules
+## Application Modules
 
 In order to configure your shell for running particular application on Anselm we use Module package interface.
 
@@ -75,7 +75,7 @@ PrgEnv-gnu sets up the GNU development environment in conjunction with the bullx
 
 PrgEnv-intel sets up the INTEL development environment in conjunction with the Intel MPI library
 
-### Application Modules Path Expansion
+## Application Modules Path Expansion
 
 All application modules on Salomon cluster (and further) will be build using tool called [EasyBuild](http://hpcugent.github.io/easybuild/ "EasyBuild"). In case that you want to use some applications that are build by EasyBuild already, you have to modify your MODULEPATH environment variable.
 

docs.it4i/software/lmod.md

@@ -48,13 +48,13 @@ To get an overview of all available modules, you can use module avail or simply
 ```bash
 $ ml av
 ---------------------------------------- /apps/modules/compiler ----------------------------------------------
-     GCC/5.2.0	GCCcore/6.2.0 (D)    icc/2013.5.192		ifort/2013.5.192    LLVM/3.9.0-intel-2017.00 (D)
-   			...                                  ...
+   GCC/5.2.0    GCCcore/6.2.0 (D)    icc/2013.5.192     ifort/2013.5.192    LLVM/3.9.0-intel-2017.00 (D)
+                                 ...                                  ...
 
 ---------------------------------------- /apps/modules/devel -------------------------------------------------
-   Autoconf/2.69-foss-2015g                       CMake/3.0.0-intel-2016.01                           M4/1.4.17-intel-2016.01                     pkg-config/0.27.1-foss-2015g
-   Autoconf/2.69-foss-2016a                       CMake/3.3.1-foss-2015g                              M4/1.4.17-intel-2017.00                     pkg-config/0.27.1-intel-2015b
-   			...                                  ...
+   Autoconf/2.69-foss-2015g    CMake/3.0.0-intel-2016.01   M4/1.4.17-intel-2016.01   pkg-config/0.27.1-foss-2015g
+   Autoconf/2.69-foss-2016a    CMake/3.3.1-foss-2015g      M4/1.4.17-intel-2017.00   pkg-config/0.27.1-intel-2015b
+                                 ...                                  ...
 ```
 
 In the current module naming scheme, each module name consists of two parts:

docs.it4i/software/orca.md

@@ -10,7 +10,7 @@ The following module command makes the latest version of orca available to your
 $ module load ORCA/3_0_3-linux_x86-64
 ```
 
-**Dependency**
+### Dependency
 
 ```bash
 $ module list